PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23862.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 277aa    MW: 31476.7 Da    PI: 8.2076
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23862.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31205262359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYe eHnh+
  mrna23862.1-v1.0-hybrid 205 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEAEHNHS 262
                              99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF083877.1E-5131164IPR006566FBD domain
PfamPF105334.4E-7182201IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-32191262IPR003657WRKY domain
PROSITE profilePS5081130.595198264IPR003657WRKY domain
SuperFamilySSF1182901.44E-26200262IPR003657WRKY domain
SMARTSM007745.1E-37203263IPR003657WRKY domain
PfamPF031061.2E-26205261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKLTVFEYHS FCKLERNVFL NAPRMSDLYF HRLAENKIPA LLSQSNAAQV EILTCGLFSE  60
KILVMPRSTI QFWNLKQLEL TVEIIDDLEE GLDVLLVFSF LKASPLLQSS NLGVCHLLLS  120
SLQRQVKVKE LKEVEILGCE GNWCKIELAI YVMQRAQCLD KLVFNPSASH YPADGEWLKS  180
FQKLRLKRVV RVPAISLKMA DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH  240
VERALDDPSM LVVTYEAEHN HSLNIAEASN LILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-23191263273WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463837.11e-130PREDICTED: uncharacterized protein LOC105351416
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.15e-51WRKY DNA-binding protein 15